Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. 95412
NCBI Strain Identifiers 95412
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 131
N50 Contigs 142,235 bp
Longest Contig 266,337 bp
Scaffold Count 103
N50 Scaffolds 234,281 bp
Longest Scaffold 393,983 bp
Genome Size 4,030,154 bp
Protein Count 3,658
Coding Density 87.30%
GC Percentage 47.50%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34810v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989304
Country Mexico
Date 2013-3-25
Genbank Assembly Accession GCA_000348105.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,834
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 28
Species Taxid 666
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 1095660
Total Gap Length 1838
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APFM00000000.1