Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1; x__Vibrio cholerae O1 str. 87395
NCBI Strain Identifiers 87395
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.65%
CheckM Contamination 0.73%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 10
tRNA Count 20
Contig Count 211
N50 Contigs 116,409 bp
Longest Contig 244,187 bp
Scaffold Count 180
N50 Scaffolds 198,338 bp
Longest Scaffold 456,084 bp
Genome Size 3,858,111 bp
Protein Count 3,452
Coding Density 86.62%
GC Percentage 47.31%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34808v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00989303
Country Mexico
Date 2013-3-25
Genbank Assembly Accession GCA_000348085.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,657
Refseq Category na
Seq Rel Date 2013/03/25
Spanned Gaps 31
Species Taxid 666
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1095659
Total Gap Length 1494
Translation Table 11
tRNA Count (total) 86
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APFL00000000.1