Sphingomonas_E fennica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas_E; s__Sphingomonas_E fennica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas sp. MM-1
NCBI Strain Identifiers MM-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003034225.1)
Genome Characteristics
CheckM Completeness 99.55%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 6
N50 Contigs 4,054,833 bp
Longest Contig 4,054,833 bp
Scaffold Count 6
N50 Scaffolds 4,054,833 bp
Longest Scaffold 4,054,833 bp
Genome Size 4,633,613 bp
Protein Count 4,386
Coding Density 89.90%
GC Percentage 66.66%
Ambiguous Bases N/A
GTDB representative GCA_003034225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM34767v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02603295
Country None
Date 2013-4-16
Genbank Assembly Accession GCA_000347675.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 6
CDS Count 4,414
Refseq Category na
Seq Rel Date 2013/04/16
Spanned Gaps 0
Species Taxid 745310
SSU Count 2
Submitter Graduate School of Life Sciences, Tohoku University
Taxid 745310
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None