Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori GAMchJs117Ai
NCBI Strain Identifiers GAMchJs117Ai
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.41%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 72
N50 Contigs 55,909 bp
Longest Contig 132,123 bp
Scaffold Count 49
N50 Scaffolds 78,209 bp
Longest Scaffold 198,715 bp
Genome Size 1,612,146 bp
Protein Count 1,513
Coding Density 90.80%
GC Percentage 39.26%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34683v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436921
Country None
Date 2013-3-21
Genbank Assembly Accession GCA_000346835.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,550
Refseq Category na
Seq Rel Date 2013/03/21
Spanned Gaps 23
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159061
Total Gap Length 460
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APEK00000000.1