| GTDB Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp000346225 |
|---|---|
| Filtered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__ |
| Unfiltered NCBI Taxonomy | d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; s__Pseudomonas sp. Lz4W |
| NCBI Strain Identifiers | Lz4W |
| GTDB Type Material Designation | not type material |
| GTDB Representative of Species | True (4 genomes in species cluster) |
| CheckM Completeness | 99.98% |
|---|---|
| CheckM Contamination | 0.77% |
| CheckM Strain Heterogeneity | 0.0 |
| 5S Count | 5 |
| 16S Count | 5 |
| 23S Count | 5 |
| tRNA Count | 20 |
| Contig Count | 1 |
| N50 Contigs | 5,018,820 bp |
| Longest Contig | 5,018,820 bp |
| Scaffold Count | 1 |
| N50 Scaffolds | 5,018,820 bp |
| Longest Scaffold | 5,018,820 bp |
| Genome Size | 5,018,820 bp |
| Protein Count | 4,487 |
| Coding Density | 88.46% |
| GC Percentage | 58.67% |
| Ambiguous Bases | N/A |
| GTDB representative of species | True |
| Assembly Level | Complete Genome |
|---|---|
| Assembly Name | ASM34622v2 |
| Assembly Type | n/a |
| Bioproject | PRJNA224116 |
| Biosample | SAMN02469436 |
| Country | Antarctica: Schirmacher Oasis |
| Date | 2017-12-7 |
| Genbank Assembly Accession | GCA_000346225.2 |
| Genome Category | Isolate |
| Genome Representation | full |
| Isolate | None |
| Isolation Source | soil |
| Latitude Longitude | None |
| Molecule Count | 1 |
| CDS Count | 4,487 |
| Refseq Category | na |
| Seq Rel Date | 2017/12/07 |
| Spanned Gaps | 0 |
| Species Taxid | 1206777 |
| SSU Count | 5 |
| Submitter | Centre for Cellular and Molecular Biology |
| Taxid | 1206777 |
| Total Gap Length | 0 |
| Translation Table | 11 |
| tRNA Count (total) | 61 |
| Type Material | None |
| Unspanned Gaps | 0 |
| Version Status | latest |
| WGS Master | None |