Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori HP260AFi
NCBI Strain Identifiers HP260AFi
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 74
N50 Contigs 47,479 bp
Longest Contig 227,756 bp
Scaffold Count 55
N50 Scaffolds 72,134 bp
Longest Scaffold 227,756 bp
Genome Size 1,632,900 bp
Protein Count 1,552
Coding Density 90.81%
GC Percentage 39.26%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34594v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436923
Country None
Date 2013-3-21
Genbank Assembly Accession GCA_000345945.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,578
Refseq Category na
Seq Rel Date 2013/03/21
Spanned Gaps 19
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159076
Total Gap Length 380
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APEY00000000.1