Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori HP250AFiV
NCBI Strain Identifiers HP250AFiV
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 72
N50 Contigs 46,696 bp
Longest Contig 118,545 bp
Scaffold Count 42
N50 Scaffolds 103,923 bp
Longest Scaffold 229,606 bp
Genome Size 1,583,081 bp
Protein Count 1,486
Coding Density 89.92%
GC Percentage 39.37%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34578v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436779
Country None
Date 2013-3-21
Genbank Assembly Accession GCA_000345785.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,538
Refseq Category na
Seq Rel Date 2013/03/21
Spanned Gaps 30
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159068
Total Gap Length 3447
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APEQ00000000.1