Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori HP116Bi
NCBI Strain Identifiers HP116Bi
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.5%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 71
N50 Contigs 66,177 bp
Longest Contig 118,890 bp
Scaffold Count 50
N50 Scaffolds 74,735 bp
Longest Scaffold 152,598 bp
Genome Size 1,647,421 bp
Protein Count 1,567
Coding Density 90.99%
GC Percentage 39.21%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34572v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436844
Country None
Date 2013-3-21
Genbank Assembly Accession GCA_000345725.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,597
Refseq Category na
Seq Rel Date 2013/03/21
Spanned Gaps 21
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159065
Total Gap Length 420
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APEN00000000.1