Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori GAM260ASi
NCBI Strain Identifiers GAM260ASi
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 85
N50 Contigs 41,158 bp
Longest Contig 97,054 bp
Scaffold Count 59
N50 Scaffolds 65,112 bp
Longest Scaffold 227,857 bp
Genome Size 1,628,888 bp
Protein Count 1,546
Coding Density 90.74%
GC Percentage 39.25%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34540v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436850
Country None
Date 2013-3-21
Genbank Assembly Accession GCA_000345405.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,573
Refseq Category na
Seq Rel Date 2013/03/21
Spanned Gaps 26
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159044
Total Gap Length 520
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APDT00000000.1