Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori GAM101Biv
NCBI Strain Identifiers GAM101Biv
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 77
N50 Contigs 62,758 bp
Longest Contig 106,364 bp
Scaffold Count 52
N50 Scaffolds 82,794 bp
Longest Scaffold 224,516 bp
Genome Size 1,610,927 bp
Protein Count 1,545
Coding Density 90.86%
GC Percentage 39.27%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM34494v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436925
Country None
Date 2013-3-21
Genbank Assembly Accession GCA_000344945.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastrointestinal tract
Latitude Longitude None
Molecule Count N/A
CDS Count 1,566
Refseq Category na
Seq Rel Date 2013/03/21
Spanned Gaps 25
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159020
Total Gap Length 500
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master APCW00000000.1