Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. actinidiae; x__Pseudomonas syringae pv. actinidiae TP6-1
NCBI Strain Identifiers TP6-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 483
N50 Contigs 31,517 bp
Longest Contig 143,214 bp
Scaffold Count 483
N50 Scaffolds 31,517 bp
Longest Scaffold 143,214 bp
Genome Size 6,224,105 bp
Protein Count 5,740
Coding Density 86.71%
GC Percentage 58.50%
Ambiguous Bases N/A
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name TP6-1_PSA1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471914
Country New Zealand
Date 2013-03-05
Genbank Assembly Accession GCA_000344455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,012
Refseq Category na
Seq Rel Date 2013/03/05
Spanned Gaps 0
Species Taxid 317
SSU Count 3
Submitter University of Otago
Taxid 1104685
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANJH00000000.1