Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. actinidiae; x__Pseudomonas syringae pv. actinidiae ICMP 9853
NCBI Strain Identifiers ICMP 9853
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.19%
CheckM Strain Heterogeneity 77.78
5S Count 5
16S Count 5
23S Count 5
tRNA Count 20
Contig Count 3
N50 Contigs 6,439,609 bp
Longest Contig 6,439,609 bp
Scaffold Count 3
N50 Scaffolds 6,439,609 bp
Longest Scaffold 6,439,609 bp
Genome Size 6,507,519 bp
Protein Count 5,906
Coding Density 87.01%
GC Percentage 58.63%
Ambiguous Bases N/A
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM34433v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471921
Country Japan
Date 2017-2-7
Genbank Assembly Accession GCA_000344335.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 3
CDS Count 6,126
Refseq Category na
Seq Rel Date 2017/02/07
Spanned Gaps 0
Species Taxid 317
SSU Count 5
Submitter New Zealand Genomics Limited
Taxid 1104678
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None