Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium canettii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium canettii; x__Mycobacterium canettii CIPT 140070013
NCBI Strain Identifiers STB-H;CIPT 140070013
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.88%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 542
N50 Contigs 24,100 bp
Longest Contig 97,695 bp
Scaffold Count 542
N50 Scaffolds 24,100 bp
Longest Scaffold 97,695 bp
Genome Size 4,341,599 bp
Protein Count 4,321
Coding Density 90.30%
GC Percentage 65.53%
Ambiguous Bases 9
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM34391v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272417
Country None
Date 2013-02-27
Genbank Assembly Accession GCA_000343915.1
Genome Category Isolate
Genome Representation full
Isolate STB-H
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,384
Refseq Category na
Seq Rel Date 2013/02/27
Spanned Gaps 0
Species Taxid 78331
SSU Count 1
Submitter Institut Pasteur
Taxid 1246121
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CAON00000000.1