Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptosporangiales; f__Streptosporangiaceae; g__Nocardiopsis; s__Nocardiopsis prasina
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis prasina
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis prasina; x__Nocardiopsis prasina DSM 43845
NCBI Strain Identifiers DSM 43845
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 3.02%
CheckM Strain Heterogeneity 12.5
5S Count 0
16S Count 0
23S Count 3
tRNA Count 19
Contig Count 240
N50 Contigs 60,278 bp
Longest Contig 199,821 bp
Scaffold Count 240
N50 Scaffolds 60,278 bp
Longest Scaffold 199,821 bp
Genome Size 5,998,803 bp
Protein Count 5,422
Coding Density 86.46%
GC Percentage 70.82%
Ambiguous Bases 196
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name SOAPdenovo 1.06
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472147
Country None
Date 2013-02-19
Genbank Assembly Accession GCA_000341265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,301
Refseq Category na
Seq Rel Date 2013/02/19
Spanned Gaps 0
Species Taxid 2015
SSU Count 0
Submitter Yunnan Institute of Microbiology, Yunnan University
Taxid 1245475
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ANAE00000000.1