Nocardiopsis_A halophila
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptosporangiales; f__Streptosporangiaceae; g__Nocardiopsis_A; s__Nocardiopsis_A halophila
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis halophila
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis halophila; x__Nocardiopsis halophila DSM 44494
NCBI Strain Identifiers DSM 44494
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.63%
CheckM Contamination 0.46%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 300
N50 Contigs 40,728 bp
Longest Contig 114,073 bp
Scaffold Count 300
N50 Scaffolds 40,728 bp
Longest Scaffold 114,073 bp
Genome Size 6,320,069 bp
Protein Count 5,797
Coding Density 84.36%
GC Percentage 73.65%
Ambiguous Bases 574
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name SOAPdenovo v1.06
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472157
Country None
Date 2013-02-19
Genbank Assembly Accession GCA_000341245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,593
Refseq Category na
Seq Rel Date 2013/02/19
Spanned Gaps 0
Species Taxid 141692
SSU Count 1
Submitter Yunnan Institute of Microbiology, Yunnan University
Taxid 1245472
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ANAD00000000.1