Nocardiopsis valliformis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptosporangiales; f__Streptosporangiaceae; g__Nocardiopsis; s__Nocardiopsis valliformis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis valliformis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptosporangiales; f__Nocardiopsaceae; g__Nocardiopsis; s__Nocardiopsis valliformis; x__Nocardiopsis valliformis DSM 45023
NCBI Strain Identifiers DSM 45023
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 88
N50 Contigs 177,481 bp
Longest Contig 480,063 bp
Scaffold Count 88
N50 Scaffolds 177,481 bp
Longest Scaffold 480,063 bp
Genome Size 7,145,336 bp
Protein Count 6,282
Coding Density 86.19%
GC Percentage 69.64%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name genetic mechanisms of environmental adaptability
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02472148
Country China
Date 2013-02-19
Genbank Assembly Accession GCA_000340985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source alkali lake soil
Latitude Longitude None
Molecule Count N/A
CDS Count 6,155
Refseq Category na
Seq Rel Date 2013/02/19
Spanned Gaps 0
Species Taxid 239974
SSU Count 1
Submitter Yunnan Institute of Microbiology, Yunnan University
Taxid 1246448
Total Gap Length 0
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ANAZ00000000.1