Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli SEPT362
NCBI Strain Identifiers SEPT362
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 173
N50 Contigs 87,306 bp
Longest Contig 287,705 bp
Scaffold Count 173
N50 Scaffolds 87,306 bp
Longest Scaffold 287,705 bp
Genome Size 5,279,952 bp
Protein Count 5,065
Coding Density 87.65%
GC Percentage 50.65%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name SEPT362
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471326
Country Brazil
Date 2013-02-12
Genbank Assembly Accession GCA_000340275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source liver of a chick with clinical signs of septicemia
Latitude Longitude None
Molecule Count N/A
CDS Count 5,515
Refseq Category na
Seq Rel Date 2013/02/12
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter UNICAMP
Taxid 1196033
Total Gap Length 0
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOGL00000000.1