Treponema_B denticola
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Treponematales; f__Treponemataceae; g__Treponema_B; s__Treponema_B denticola
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema denticola
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema denticola; x__Treponema denticola ATCC 33520
NCBI Strain Identifiers ATCC 33520
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000008185.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 25
N50 Contigs 235,179 bp
Longest Contig 463,700 bp
Scaffold Count 2
N50 Scaffolds 2,883,239 bp
Longest Scaffold 2,883,239 bp
Genome Size 2,886,890 bp
Protein Count 2,629
Coding Density 91.17%
GC Percentage 37.88%
Ambiguous Bases N/A
GTDB representative GCA_000008185.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Trep_dent_ATCC_33520_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02596718
Country None
Date 2013-9-3
Genbank Assembly Accession GCA_000338615.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,694
Refseq Category na
Seq Rel Date 2013/09/03
Spanned Gaps 23
Species Taxid 158
SSU Count 2
Submitter Broad Institute
Taxid 999428
Total Gap Length 14768
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AGDS00000000.1