Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae P-18785
NCBI Strain Identifiers P-18785
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 99.99%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 158
N50 Contigs 83,024 bp
Longest Contig 202,356 bp
Scaffold Count 158
N50 Scaffolds 83,024 bp
Longest Scaffold 202,356 bp
Genome Size 3,978,895 bp
Protein Count 3,550
Coding Density 88.11%
GC Percentage 47.45%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name vcp18785v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469778
Country Russia: Rostov-on-Done
Date 2013-2-6
Genbank Assembly Accession GCA_000338215.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample from patient (carrier)
Latitude Longitude None
Molecule Count N/A
CDS Count 3,650
Refseq Category na
Seq Rel Date 2013/02/06
Spanned Gaps 0
Species Taxid 666
SSU Count 1
Submitter Central Research Institute for Epidemiology
Taxid 1258564
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANHS00000000.1