Halosimplex carlsbadense
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Halobacteria; o__Halobacteriales; f__Haloarculaceae; g__Halosimplex; s__Halosimplex carlsbadense
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Halobacteria; o__Halobacteriales; f__Haloarculaceae; g__Halosimplex; s__Halosimplex carlsbadense
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Halobacteria; o__Halobacteriales; f__Haloarculaceae; g__Halosimplex; s__Halosimplex carlsbadense; x__Halosimplex carlsbadense 2-9-1
NCBI Strain Identifiers 2-9-1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.0%
CheckM Contamination 2.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 6
tRNA Count 20
Contig Count 50
N50 Contigs 193,049 bp
Longest Contig 389,248 bp
Scaffold Count 50
N50 Scaffolds 193,049 bp
Longest Scaffold 389,248 bp
Genome Size 4,694,889 bp
Protein Count 4,581
Coding Density 86.23%
GC Percentage 67.67%
Ambiguous Bases 80
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM33745v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471654
Country None
Date 2013-02-04
Genbank Assembly Accession GCA_000337455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,407
Refseq Category representative genome
Seq Rel Date 2013/02/04
Spanned Gaps 0
Species Taxid 171164
SSU Count 1
Submitter University of California, Davis
Taxid 797114
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AOIU00000000.1