Afipia clevelandensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Afipia; s__Afipia clevelandensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__Afipia clevelandensis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__Afipia clevelandensis; x__Afipia clevelandensis ATCC 49720
NCBI Strain Identifiers ATCC 49720
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.21%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 19
N50 Contigs 378,765 bp
Longest Contig 506,816 bp
Scaffold Count 1
N50 Scaffolds 4,399,548 bp
Longest Scaffold 4,399,548 bp
Genome Size 4,399,548 bp
Protein Count 4,195
Coding Density 88.19%
GC Percentage 61.68%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Afip_clev_ATCC49720_G12581_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02463899
Country None
Date 2013-2-6
Genbank Assembly Accession GCA_000336555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,192
Refseq Category representative genome
Seq Rel Date 2013/02/06
Spanned Gaps 18
Species Taxid 1034
SSU Count 1
Submitter Broad Institute
Taxid 883079
Total Gap Length 5104
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AGWY00000000.1