Staphylococcus aureus
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus aureus; sb__Staphylococcus aureus subsp. aureus; x__Staphylococcus aureus subsp. aureus 3989
NCBI Strain Identifiers 3989
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001027105.1)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 3
23S Count 5
tRNA Count 19
Contig Count 43
N50 Contigs 298,298 bp
Longest Contig 451,769 bp
Scaffold Count 43
N50 Scaffolds 298,298 bp
Longest Scaffold 451,769 bp
Genome Size 2,763,653 bp
Protein Count 2,545
Coding Density 84.06%
GC Percentage 32.70%
Ambiguous Bases N/A
GTDB representative GCA_001027105.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name S.aureus 3989
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01906555
Country India
Date 2013-02-01
Genbank Assembly Accession GCA_000336315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputa and first aspirate after intubation of a 75 year-old female with pleural effusion; pneumonitis; and post radiation therapy
Latitude Longitude None
Molecule Count N/A
CDS Count 2,792
Refseq Category na
Seq Rel Date 2013/02/01
Spanned Gaps 0
Species Taxid 1280
SSU Count 4
Submitter National Center for Biological Sciences
Taxid 1221453
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ALWH00000000.1