Prevotella nigrescens
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Prevotella; s__Prevotella nigrescens
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella nigrescens
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella nigrescens; x__Prevotella nigrescens F0103
NCBI Strain Identifiers F0103
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000220235.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 100.0
5S Count 5
16S Count 3
23S Count 2
tRNA Count 19
Contig Count 131
N50 Contigs 45,493 bp
Longest Contig 184,151 bp
Scaffold Count 131
N50 Scaffolds 45,493 bp
Longest Scaffold 184,151 bp
Genome Size 3,021,735 bp
Protein Count 2,759
Coding Density 85.86%
GC Percentage 42.66%
Ambiguous Bases 2
GTDB representative GCA_000220235.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Prev_nigr_F0103_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02595377
Country None
Date 2013-02-01
Genbank Assembly Accession GCA_000336235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,683
Refseq Category na
Seq Rel Date 2013/02/01
Spanned Gaps 0
Species Taxid 28133
SSU Count 4
Submitter Broad Institute
Taxid 702439
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADGJ00000000.1