Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157; x__Escherichia coli PA11
NCBI Strain Identifiers PA11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 0
23S Count 0
tRNA Count 18
Contig Count 121
N50 Contigs 122,163 bp
Longest Contig 375,032 bp
Scaffold Count 121
N50 Scaffolds 122,163 bp
Longest Scaffold 375,032 bp
Genome Size 5,158,962 bp
Protein Count 4,901
Coding Density 87.93%
GC Percentage 50.31%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM33541v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01112590
Country USA
Date 2013-1-31
Genbank Assembly Accession GCA_000335415.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,338
Refseq Category na
Seq Rel Date 2013/01/31
Spanned Gaps 0
Species Taxid 562
SSU Count 0
Submitter Institute for Genome Sciences
Taxid 1051349
Total Gap Length 0
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOEI00000000.1