Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae; x__Streptococcus pneumoniae PCS70012
NCBI Strain Identifiers PCS70012
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 48
N50 Contigs 1,306,404 bp
Longest Contig 1,306,404 bp
Scaffold Count 47
N50 Scaffolds 1,704,662 bp
Longest Scaffold 1,704,662 bp
Genome Size 2,089,433 bp
Protein Count 2,100
Coding Density 85.58%
GC Percentage 40.17%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM33459v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02299521
Country None
Date 2013-1-31
Genbank Assembly Accession GCA_000334595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source biological product [ENVO:02000043]
Latitude Longitude None
Molecule Count N/A
CDS Count 2,255
Refseq Category na
Seq Rel Date 2013/01/31
Spanned Gaps 1
Species Taxid 1313
SSU Count 4
Submitter Washington University
Taxid 1159085
Total Gap Length 1000
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKQY00000000.1