Aggregatibacter actinomycetemcomitans
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans; x__Aggregatibacter actinomycetemcomitans serotype b str. S23A
NCBI Strain Identifiers S23A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000372365.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 74
N50 Contigs 63,372 bp
Longest Contig 166,390 bp
Scaffold Count 44
N50 Scaffolds 94,496 bp
Longest Scaffold 410,067 bp
Genome Size 2,170,434 bp
Protein Count 2,081
Coding Density 86.05%
GC Percentage 44.30%
Ambiguous Bases 3
GTDB representative GCA_000372365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name AaS23Av2.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02471978
Country Finland
Date 2015-8-17
Genbank Assembly Accession GCA_000332955.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source saliva from an adult with chronic periodontitis
Latitude Longitude None
Molecule Count N/A
CDS Count 2,095
Refseq Category na
Seq Rel Date 2015/08/17
Spanned Gaps 30
Species Taxid 714
SSU Count 1
Submitter Bumgarner laboratory, Department of Microbiology, University of Washington
Taxid 1167008
Total Gap Length 48263
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJMH00000000.2