Ochrobactrum intermedium
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Ochrobactrum; s__Ochrobactrum intermedium
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Brucellaceae; g__Ochrobactrum; s__Ochrobactrum intermedium
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Brucellaceae; g__Ochrobactrum; s__Ochrobactrum intermedium; x__Ochrobactrum intermedium M86
NCBI Strain Identifiers M86
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000182645.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.89%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 2
23S Count 4
tRNA Count 20
Contig Count 148
N50 Contigs 78,024 bp
Longest Contig 224,875 bp
Scaffold Count 148
N50 Scaffolds 78,024 bp
Longest Scaffold 224,875 bp
Genome Size 5,188,688 bp
Protein Count 5,229
Coding Density 87.81%
GC Percentage 57.89%
Ambiguous Bases 79
GTDB representative GCA_000182645.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM33283v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470612
Country India
Date 2013-01-23
Genbank Assembly Accession GCA_000332835.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source gastric biopsy
Latitude Longitude None
Molecule Count N/A
CDS Count 5,179
Refseq Category na
Seq Rel Date 2013/01/23
Spanned Gaps 0
Species Taxid 94625
SSU Count 3
Submitter National Centre for Cell Science
Taxid 1234597
Total Gap Length 0
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOGE00000000.1