Nitrosopumilus koreensis
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Thermoproteota; c__Nitrososphaeria; o__Nitrososphaerales; f__Nitrosopumilaceae; g__Nitrosopumilus; s__Nitrosopumilus koreensis
Filtered NCBI Taxonomy d__Archaea; p__Thaumarchaeota; c__; o__Nitrosopumilales; f__Nitrosopumilaceae; g__Nitrosopumilus; s__
Unfiltered NCBI Taxonomy d__Archaea; x__TACK group; p__Thaumarchaeota; o__Nitrosopumilales; f__Nitrosopumilaceae; g__Nitrosopumilus; s__Nitrosopumilus sp. SJ
NCBI Strain Identifiers SJ
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000299365.1)
Genome Characteristics
CheckM Completeness 96.12%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 15
N50 Contigs 166,117 bp
Longest Contig 348,922 bp
Scaffold Count 15
N50 Scaffolds 166,117 bp
Longest Scaffold 348,922 bp
Genome Size 1,650,825 bp
Protein Count 2,015
Coding Density 90.47%
GC Percentage 34.20%
Ambiguous Bases N/A
GTDB representative GCA_000299365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name NSJ
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469589
Country South Korea: the East Sea
Date 2012-12-31
Genbank Assembly Accession GCA_000328945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source marine sediment
Latitude Longitude None
Molecule Count N/A
CDS Count 1,918
Refseq Category na
Seq Rel Date 2012/12/31
Spanned Gaps 0
Species Taxid 1027374
SSU Count 1
Submitter Chungbuk National University
Taxid 1027374
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJVI00000000.1