Methanoregula formicica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacteriota; c__Methanomicrobia; o__Methanomicrobiales; f__Methanoregulaceae; g__Methanoregula; s__Methanoregula formicica
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanomicrobiales; f__Methanoregulaceae; g__Methanoregula; s__Methanoregula formicica
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Stenosarchaea group; c__Methanomicrobia; o__Methanomicrobiales; f__Methanoregulaceae; g__Methanoregula; s__Methanoregula formicica; x__Methanoregula formicica SMSP
NCBI Strain Identifiers SMSP
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.87%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1
N50 Contigs 2,820,858 bp
Longest Contig 2,820,858 bp
Scaffold Count 1
N50 Scaffolds 2,820,858 bp
Longest Scaffold 2,820,858 bp
Genome Size 2,820,858 bp
Protein Count 2,880
Coding Density 87.19%
GC Percentage 55.20%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM32748v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02232038
Country Japan
Date 2012-12-21
Genbank Assembly Accession GCA_000327485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source methanogenic sludge in a mesophilic upflow anaerobic sludge blanket (UASB) reactor used to treat a beer brewery effluent
Latitude Longitude None
Molecule Count 1
CDS Count 2,824
Refseq Category representative genome
Seq Rel Date 2012/12/21
Spanned Gaps 0
Species Taxid 882104
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 593750
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None