Undefined name (Failed Quality Check)
Isolate HQ 16S 12 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; x__Yersinia pestis J1978002
NCBI Strain Identifiers J1978002
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.06%
CheckM Contamination 2.08%
CheckM Strain Heterogeneity 43.48
5S Count 0
16S Count 1
23S Count 0
tRNA Count 12
Contig Count 1,098
N50 Contigs 7,722 bp
Longest Contig 49,002 bp
Scaffold Count 1,098
N50 Scaffolds 7,722 bp
Longest Scaffold 49,002 bp
Genome Size 4,532,297 bp
Protein Count 4,528
Coding Density 84.38%
GC Percentage 47.47%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM32512v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02403090
Country None
Date 2012-12-07
Genbank Assembly Accession GCA_000325125.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,619
Refseq Category na
Seq Rel Date 2012/12/07
Spanned Gaps 0
Species Taxid 632
SSU Count 1
Submitter Beijing Genomics Institute
Taxid 755912
Total Gap Length 0
Translation Table 11
tRNA Count (total) 17
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADSQ00000000.1