Undefined name (Failed Quality Check)
Isolate HQ 23S 12 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; x__Yersinia pestis F1954001
NCBI Strain Identifiers F1954001
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.27%
CheckM Contamination 2.33%
CheckM Strain Heterogeneity 43.48
5S Count 0
16S Count 0
23S Count 2
tRNA Count 12
Contig Count 1,058
N50 Contigs 8,022 bp
Longest Contig 29,935 bp
Scaffold Count 1,058
N50 Scaffolds 8,022 bp
Longest Scaffold 29,935 bp
Genome Size 4,521,000 bp
Protein Count 4,520
Coding Density 84.48%
GC Percentage 47.46%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM32484v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02403076
Country None
Date 2012-12-07
Genbank Assembly Accession GCA_000324845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,605
Refseq Category na
Seq Rel Date 2012/12/07
Spanned Gaps 0
Species Taxid 632
SSU Count 0
Submitter Beijing Genomics Institute
Taxid 755890
Total Gap Length 0
Translation Table 11
tRNA Count (total) 16
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADSC00000000.1