Undefined name (Failed Quality Check)
Isolate HQ 16S/23S 13 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; x__Yersinia pestis D1964001
NCBI Strain Identifiers D1964001
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.14%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 42.86
5S Count 0
16S Count 3
23S Count 5
tRNA Count 13
Contig Count 1,012
N50 Contigs 9,400 bp
Longest Contig 46,772 bp
Scaffold Count 1,012
N50 Scaffolds 9,400 bp
Longest Scaffold 46,772 bp
Genome Size 4,389,464 bp
Protein Count 4,352
Coding Density 84.17%
GC Percentage 47.50%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM32468v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02403069
Country None
Date 2012-12-07
Genbank Assembly Accession GCA_000324685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,447
Refseq Category na
Seq Rel Date 2012/12/07
Spanned Gaps 0
Species Taxid 632
SSU Count 3
Submitter Beijing Genomics Institute
Taxid 755882
Total Gap Length 0
Translation Table 11
tRNA Count (total) 19
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADRU00000000.1