Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O104:H4; x__Escherichia coli O104:H4 str. Ec11-4988
NCBI Strain Identifiers Ec11-4988
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 5
tRNA Count 19
Contig Count 43
N50 Contigs 316,503 bp
Longest Contig 984,335 bp
Scaffold Count 15
N50 Scaffolds 1,244,049 bp
Longest Scaffold 1,476,949 bp
Genome Size 5,403,929 bp
Protein Count 5,120
Coding Density 86.69%
GC Percentage 50.61%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_Ec11-4988_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00778958
Country France: Bordeaux
Date 2012-12-13
Genbank Assembly Accession GCA_000320195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,609
Refseq Category na
Seq Rel Date 2012/12/13
Spanned Gaps 28
Species Taxid 562
SSU Count 6
Submitter Broad Institute
Taxid 1240764
Total Gap Length 44958
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHOY00000000.1