Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O104:H4; x__Escherichia coli O104:H4 str. Ec11-4987
NCBI Strain Identifiers Ec11-4987
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 36
N50 Contigs 331,614 bp
Longest Contig 546,716 bp
Scaffold Count 11
N50 Scaffolds 1,117,040 bp
Longest Scaffold 1,625,766 bp
Genome Size 5,304,113 bp
Protein Count 5,009
Coding Density 86.72%
GC Percentage 50.62%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_Ec11-4987_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00778957
Country France: Bordeaux
Date 2012-12-13
Genbank Assembly Accession GCA_000319975.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,482
Refseq Category na
Seq Rel Date 2012/12/13
Spanned Gaps 25
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1240763
Total Gap Length 55771
Translation Table 11
tRNA Count (total) 83
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AHOX00000000.1