Porphyromonas catoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas catoniae
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas catoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas catoniae; x__Porphyromonas catoniae F0037
NCBI Strain Identifiers F0037
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000565015.1)
Genome Characteristics
CheckM Completeness 95.05%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 43
N50 Contigs 122,603 bp
Longest Contig 380,459 bp
Scaffold Count 18
N50 Scaffolds 196,643 bp
Longest Scaffold 545,024 bp
Genome Size 2,101,485 bp
Protein Count 1,704
Coding Density 86.43%
GC Percentage 51.01%
Ambiguous Bases N/A
GTDB representative GCA_000565015.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM31821v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436931
Country None
Date 2013-1-29
Genbank Assembly Accession GCA_000318215.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source oral cavity
Latitude Longitude None
Molecule Count N/A
CDS Count 1,623
Refseq Category na
Seq Rel Date 2013/01/29
Spanned Gaps 25
Species Taxid 41976
SSU Count 1
Submitter Washington University
Taxid 1127696
Total Gap Length 500
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMEQ00000000.1