Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella bronchiseptica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella bronchiseptica; x__Bordetella bronchiseptica 253
NCBI Strain Identifiers 253
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 1
N50 Contigs 5,264,383 bp
Longest Contig 5,264,383 bp
Scaffold Count 1
N50 Scaffolds 5,264,383 bp
Longest Scaffold 5,264,383 bp
Genome Size 5,264,383 bp
Protein Count 4,927
Coding Density 91.25%
GC Percentage 68.12%
Ambiguous Bases 2
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM31801v1
Assembly Type n/a
Bioproject PRJNA178913
Biosample SAMEA2272388
Country None
Date 2012-10-11
Genbank Assembly Accession GCA_000318015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,782
Refseq Category reference genome
Seq Rel Date 2012/10/11
Spanned Gaps 0
Species Taxid 518
SSU Count 3
Submitter WTSI
Taxid 568707
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None