Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella holmesii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella holmesii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella holmesii; x__Bordetella holmesii 44057
NCBI Strain Identifiers 44057
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000612485.1)
Genome Characteristics
CheckM Completeness 96.45%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 2
tRNA Count 18
Contig Count 298
N50 Contigs 26,322 bp
Longest Contig 123,905 bp
Scaffold Count 298
N50 Scaffolds 26,322 bp
Longest Scaffold 123,905 bp
Genome Size 3,431,672 bp
Protein Count 3,752
Coding Density 89.79%
GC Percentage 62.85%
Ambiguous Bases N/A
GTDB representative GCA_000612485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 44057 CLC assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00857838
Country USA: NY; New York
Date 2012-12-05
Genbank Assembly Accession GCA_000317335.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood from a 7 year-old patient
Latitude Longitude None
Molecule Count N/A
CDS Count 3,353
Refseq Category na
Seq Rel Date 2012/12/05
Spanned Gaps 0
Species Taxid 35814
SSU Count 0
Submitter Columbia University
Taxid 1172205
Total Gap Length 0
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANGE00000000.1