Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 97.0003
NCBI Strain Identifiers 97.0003
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 4
23S Count 7
tRNA Count 18
Contig Count 125
N50 Contigs 126,438 bp
Longest Contig 376,257 bp
Scaffold Count 115
N50 Scaffolds 141,009 bp
Longest Scaffold 376,257 bp
Genome Size 5,192,601 bp
Protein Count 4,946
Coding Density 87.51%
GC Percentage 50.23%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM31674v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01041349
Country Japan
Date 2012-12-13
Genbank Assembly Accession GCA_000316745.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,415
Refseq Category na
Seq Rel Date 2012/12/13
Spanned Gaps 10
Species Taxid 562
SSU Count 4
Submitter Institute for Genome Sciences
Taxid 1005416
Total Gap Length 200
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANLZ00000000.1