Escherichia dysenteriae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli 90.2281
NCBI Strain Identifiers 90.2281
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 416
N50 Contigs 97,970 bp
Longest Contig 353,022 bp
Scaffold Count 369
N50 Scaffolds 115,053 bp
Longest Scaffold 374,927 bp
Genome Size 5,257,500 bp
Protein Count 5,203
Coding Density 87.39%
GC Percentage 50.32%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM31642v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01041333
Country Brazil
Date 2012-12-12
Genbank Assembly Accession GCA_000316425.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,678
Refseq Category na
Seq Rel Date 2012/12/12
Spanned Gaps 47
Species Taxid 562
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 1005402
Total Gap Length 1902
Translation Table 11
tRNA Count (total) 84
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANLM00000000.1