Helicobacter pylori_C
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_C
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori Aklavik117
NCBI Strain Identifiers Aklavik117
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000277405.1)
Genome Characteristics
CheckM Completeness 99.36%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 3
N50 Contigs 1,614,447 bp
Longest Contig 1,614,447 bp
Scaffold Count 3
N50 Scaffolds 1,614,447 bp
Longest Scaffold 1,614,447 bp
Genome Size 1,636,125 bp
Protein Count 1,534
Coding Density 91.37%
GC Percentage 38.73%
Ambiguous Bases N/A
GTDB representative GCA_000277405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM31595v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02604323
Country Canada: Aklavik village; Northwest Territories
Date 2012-11-26
Genbank Assembly Accession GCA_000315955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 3
CDS Count 1,545
Refseq Category na
Seq Rel Date 2012/11/26
Spanned Gaps 0
Species Taxid 210
SSU Count 2
Submitter Washington University Medical School
Taxid 1055531
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None