Desulfotomaculum hydrothermale
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_B; c__Desulfotomaculia; o__Desulfotomaculales; f__Desulfotomaculaceae; g__Desulfotomaculum; s__Desulfotomaculum hydrothermale
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__Desulfotomaculum; s__Desulfotomaculum hydrothermale
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Peptococcaceae; g__Desulfotomaculum; s__Desulfotomaculum hydrothermale; x__Desulfotomaculum hydrothermale Lam5 = DSM 18033
NCBI Strain Identifiers Lam5
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 4
tRNA Count 19
Contig Count 26
N50 Contigs 244,517 bp
Longest Contig 638,906 bp
Scaffold Count 16
N50 Scaffolds 244,517 bp
Longest Scaffold 638,906 bp
Genome Size 2,695,031 bp
Protein Count 2,654
Coding Density 86.70%
GC Percentage 49.48%
Ambiguous Bases 370
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM31536v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272113
Country None
Date 2012-11-09
Genbank Assembly Accession GCA_000315365.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,651
Refseq Category representative genome
Seq Rel Date 2012/11/09
Spanned Gaps 10
Species Taxid 412895
SSU Count 2
Submitter Genoscope CEA
Taxid 1121428
Total Gap Length 127
Translation Table 11
tRNA Count (total) 59
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CAOS00000000.1