Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Afipia; s__Afipia broomeae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__Afipia broomeae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Afipia; s__Afipia broomeae; x__Afipia broomeae ATCC 49717
NCBI Strain Identifiers ATCC 49717
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (9 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 6
N50 Contigs 1,473,301 bp
Longest Contig 1,479,263 bp
Scaffold Count 4
N50 Scaffolds 2,643,477 bp
Longest Scaffold 2,643,477 bp
Genome Size 5,261,968 bp
Protein Count 5,049
Coding Density 87.78%
GC Percentage 61.34%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Afip_broo_ATCC_49717_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02596753
Country None
Date 2013-2-6
Genbank Assembly Accession GCA_000314675.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,046
Refseq Category representative genome
Seq Rel Date 2013/02/06
Spanned Gaps 2
Species Taxid 56946
SSU Count 1
Submitter Broad Institute
Taxid 883078
Total Gap Length 1970
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AGWX00000000.1