Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Erysipelotrichales; f__Erysipelotrichaceae; g__Dielma; s__Dielma fastidiosa
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Erysipelotrichia; o__Erysipelotrichales; f__Erysipelotrichaceae; g__Dielma; s__Dielma fastidiosa
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Erysipelotrichia; o__Erysipelotrichales; f__Erysipelotrichaceae; g__Dielma; s__Dielma fastidiosa
NCBI Strain Identifiers JC13
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 2.83%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 145
N50 Contigs 116,975 bp
Longest Contig 224,193 bp
Scaffold Count 95
N50 Scaffolds 410,413 bp
Longest Scaffold 608,951 bp
Genome Size 3,615,034 bp
Protein Count 3,506
Coding Density 88.97%
GC Percentage 39.97%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM31356v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2272058
Country Senegal
Date 2012-11-19
Genbank Assembly Accession GCA_000313565.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source host stool sample
Latitude Longitude None
Molecule Count N/A
CDS Count 3,465
Refseq Category representative genome
Seq Rel Date 2012/11/19
Spanned Gaps 50
Species Taxid 1034346
SSU Count 1
Submitter laboratoire URMITE CNRS 6236
Taxid 1034346
Total Gap Length 39671
Translation Table 11
tRNA Count (total) 50
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master CAEN00000000.1