Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. STm1
NCBI Strain Identifiers STm1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 3
23S Count 9
tRNA Count 20
Contig Count 115
N50 Contigs 258,898 bp
Longest Contig 608,959 bp
Scaffold Count 115
N50 Scaffolds 258,898 bp
Longest Scaffold 608,959 bp
Genome Size 4,942,590 bp
Protein Count 4,697
Coding Density 87.44%
GC Percentage 52.15%
Ambiguous Bases 43
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name STm1.2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02221889
Country Australia
Date 2013-08-23
Genbank Assembly Accession GCA_000312825.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,003
Refseq Category na
Seq Rel Date 2013/08/23
Spanned Gaps 0
Species Taxid 28901
SSU Count 3
Submitter University of Melbourne
Taxid 1218143
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMDX00000000.2