Helicobacter pylori_BU
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori_BU
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter pylori; x__Helicobacter pylori GAM100Ai
NCBI Strain Identifiers GAM100Ai
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900120335.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 79
N50 Contigs 52,379 bp
Longest Contig 116,525 bp
Scaffold Count 46
N50 Scaffolds 76,611 bp
Longest Scaffold 206,065 bp
Genome Size 1,633,043 bp
Protein Count 1,560
Coding Density 90.92%
GC Percentage 39.27%
Ambiguous Bases N/A
GTDB representative GCA_900120335.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM31000v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436927
Country None
Date 2012-11-6
Genbank Assembly Accession GCA_000310005.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,573
Refseq Category na
Seq Rel Date 2012/11/06
Spanned Gaps 33
Species Taxid 210
SSU Count 1
Submitter Washington University
Taxid 1159019
Total Gap Length 660
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANFP00000000.1