Phytoplasma sp000309485
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Acholeplasmatales; f__Acholeplasmataceae; g__Phytoplasma; s__Phytoplasma sp000309485
Filtered NCBI Taxonomy d__Bacteria; p__Tenericutes; c__Mollicutes; o__Acholeplasmatales; f__Acholeplasmataceae; g__Candidatus Phytoplasma; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Tenericutes; c__Mollicutes; o__Acholeplasmatales; f__Acholeplasmataceae; g__Candidatus Phytoplasma; x__16SrIII (X-disease group); s__Milkweed yellows phytoplasma; x__Milkweed yellows phytoplasma str. MW1
NCBI Strain Identifiers MW1
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 94.52%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 158
N50 Contigs 7,972 bp
Longest Contig 22,485 bp
Scaffold Count 158
N50 Scaffolds 7,972 bp
Longest Scaffold 22,485 bp
Genome Size 583,806 bp
Protein Count 572
Coding Density 79.77%
GC Percentage 27.43%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM30948v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01041251
Country Italy
Date 2012-10-01
Genbank Assembly Accession GCA_000309485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Milkweed Yellows
Latitude Longitude None
Molecule Count N/A
CDS Count 548
Refseq Category representative genome
Seq Rel Date 2012/10/01
Spanned Gaps 0
Species Taxid 208434
SSU Count 1
Submitter Università di Udine
Taxid 1196417
Total Gap Length 0
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AKIL00000000.1