Nocardia pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Nocardia; s__Nocardia pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Nocardia; s__Nocardia pneumoniae; x__Nocardia pneumoniae NBRC 100136
NCBI Strain Identifiers NBRC 100136
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 1.65%
CheckM Strain Heterogeneity 8.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 152
N50 Contigs 159,154 bp
Longest Contig 382,971 bp
Scaffold Count 152
N50 Scaffolds 159,154 bp
Longest Scaffold 382,971 bp
Genome Size 7,588,197 bp
Protein Count 6,781
Coding Density 87.77%
GC Percentage 68.10%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM30875v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00041769
Country None
Date 2012-07-16
Genbank Assembly Accession GCA_000308755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,677
Refseq Category representative genome
Seq Rel Date 2012/07/16
Spanned Gaps 0
Species Taxid 228601
SSU Count 1
Submitter National Institute of Technology and Evaluation
Taxid 1206737
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BAGF00000000.1