Undefined name (Failed Quality Check)
Isolate LQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. Chol1
NCBI Strain Identifiers Chol1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.92%
CheckM Contamination 23.77%
CheckM Strain Heterogeneity 97.81
5S Count 1
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 199
N50 Contigs 79,285 bp
Longest Contig 299,121 bp
Scaffold Count 199
N50 Scaffolds 79,285 bp
Longest Scaffold 299,121 bp
Genome Size 4,869,033 bp
Protein Count 4,649
Coding Density 89.24%
GC Percentage 64.02%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM30601v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470134
Country Germany
Date 2012-10-17
Genbank Assembly Accession GCA_000306015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 4,605
Refseq Category na
Seq Rel Date 2012/10/17
Spanned Gaps 0
Species Taxid 440512
SSU Count 2
Submitter University of Muenster
Taxid 440512
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AMSL00000000.1