Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio harveyi
NCBI Strain Identifiers HENC-01
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001591145.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.18%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 164
N50 Contigs 135,702 bp
Longest Contig 311,886 bp
Scaffold Count 138
N50 Scaffolds 163,759 bp
Longest Scaffold 547,508 bp
Genome Size 5,675,890 bp
Protein Count 5,167
Coding Density 86.83%
GC Percentage 44.98%
Ambiguous Bases N/A
GTDB representative GCA_001591145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30571v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00752546
Country Haiti
Date 2012-10-16
Genbank Assembly Accession GCA_000305715.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source environmental
Latitude Longitude None
Molecule Count N/A
CDS Count 5,336
Refseq Category na
Seq Rel Date 2012/10/16
Spanned Gaps 26
Species Taxid 669
SSU Count 2
Submitter Institute for Genome Sciences
Taxid 669
Total Gap Length 1328
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJSQ00000000.1