Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae HC-17A2
NCBI Strain Identifiers HC-17A2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 135
N50 Contigs 168,043 bp
Longest Contig 284,443 bp
Scaffold Count 94
N50 Scaffolds 199,340 bp
Longest Scaffold 573,032 bp
Genome Size 4,023,476 bp
Protein Count 3,569
Coding Density 87.58%
GC Percentage 47.49%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM30567v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00752543
Country Haiti
Date 2012-10-16
Genbank Assembly Accession GCA_000305675.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,765
Refseq Category na
Seq Rel Date 2012/10/16
Spanned Gaps 41
Species Taxid 666
SSU Count 3
Submitter Institute for Genome Sciences
Taxid 1000952
Total Gap Length 1821
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AJSI00000000.1